miRBase entry: ptr-mir-548a-2

Stem-loop ptr-mir-548a-2


Accession
MI0008747
Description
Pan troglodytes ptr-mir-548a-2 precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
1 open access papers mention ptr-mir-548a-2
(2 sentences)

Sequence

gugauguguauuagguuugugcaaaaguaacugggguuuuuugccauuaaaaguaaugaCAAAACUGGCAAUUACUUUUGCaccaaacuaauauaa
......((((((((..(.((((((((((((.((.(((((..((.(((((....))))).)))))))..)).)))))))))))).)..)))))))).

Structure
gugaug        gu u            c  -g     uu  c     a 
      uguauuag  u gugcaaaaguaa ug  gguuu  ug cauua a
      ||||||||  | |||||||||||| ||  |||||  || |||||  
      auauaauc  a caCGUUUUCAUU AC  UCAAA  AC guaau a
-----a        aa c            A  GG     --  a     g 


Annotation confidence Not enough data
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Genome context
chr6: 139153767-139153862 [+]

Database links

Mature ptr-miR-548a

Accession MIMAT0008218
Description Pan troglodytes ptr-miR-548a mature miRNA
Sequence 60 - CAAAACUGGCAAUUACUUUUGC - 81
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70