miRBase entry: ptr-mir-548b

Stem-loop ptr-mir-548b


Accession
MI0008748
Description
Pan troglodytes ptr-mir-548b precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
1 open access papers mention ptr-mir-548b
(2 sentences)

Sequence

cagacuauauauuuagguuggcgcaaaaguaauugcaguuuuggccuuuauuuucaauggCAAGAACCUCAGUUGCUUUUGUgccaaccuaauacu
............(((((((((((((((((((((((..(((((.(((............))).)))))..)))))))))))))))))))))))....

Structure
cagacuauauau                       ca     g   uuuau 
            uuagguuggcgcaaaaguaauug  guuuu gcc     u
            |||||||||||||||||||||||  ||||| |||      
            aauccaaccgUGUUUUCGUUGAC  CAAGA Cgg     u
--------ucau                       UC     A   uaacu 


Annotation confidence Not enough data
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Genome context
chr6: 122780874-122780969 [-]

Database links

Mature ptr-miR-548b

Accession MIMAT0008219
Description Pan troglodytes ptr-miR-548b mature miRNA
Sequence 61 - CAAGAACCUCAGUUGCUUUUGU - 82
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70