miRBase entry: ptr-mir-548f-1

Stem-loop ptr-mir-548f-1


Accession
MI0008750
Description
Pan troglodytes ptr-mir-548f-1 precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
1 open access papers mention ptr-mir-548f-1
(2 sentences)

Sequence

uuagguuggugcaaaagaaaucaguuuuugccauuacuuucuauggcAAAAACUGUAAUUACUUUUgcaccaaccuaauag
(((((((((((((((((.((((((((((((((((........)))))))))))))..))).)))))))))))))))))...

Structure
---                 a   --             uac 
   uuagguuggugcaaaag aau  caguuuuugccau   u
   ||||||||||||||||| |||  |||||||||||||    
   aauccaaccacgUUUUC UUA  GUCAAAAAcggua   u
gau                 A   AU             ucu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr18: 57191372-57191452 [+]

Database links

Mature ptr-miR-548f

Accession MIMAT0008221
Description Pan troglodytes ptr-miR-548f mature miRNA
Sequence 48 - AAAAACUGUAAUUACUUUU - 66
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70