miRBase entry: ptr-mir-548f-2

Stem-loop ptr-mir-548f-2


Accession
MI0008751
Description
Pan troglodytes ptr-mir-548f-2 precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
1 open access papers mention ptr-mir-548f-2
(2 sentences)

Sequence

auuagguuggugcaaaccuaauugcaauuuuugcaguuuuuuuaaguaauugcAAAAACUGUAAUUACUUUUgcaccaaccuaaua
((((((((((((((((..((((((((.(((((((((((.........))))))))))).))))))))..)))))))))))))))).

Structure
-                cc        a           uuu 
 auuagguuggugcaaa  uaauugca uuuuugcaguu   u
 ||||||||||||||||  |||||||| |||||||||||   u
 uaauccaaccacgUUU  AUUAAUGU AAAAAcguuaa   a
a                UC        C           uga 


Annotation confidence Not enough data
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Genome context
chr5: 110004035-110004120 [-]

Database links

Mature ptr-miR-548f

Accession MIMAT0008221
Description Pan troglodytes ptr-miR-548f mature miRNA
Sequence 54 - AAAAACUGUAAUUACUUUU - 72
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70