miRBase entry: ptr-mir-548i-1

Stem-loop ptr-mir-548i-1


Accession
MI0008753
Description
Pan troglodytes ptr-mir-548i-1 precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
1 open access papers mention ptr-mir-548i-1
(2 sentences)

Sequence

cagauggcuccgaaguuugcacccuauuagguuggugcAAAAGUAAUUGCGGAUUUUGCCauuaaacguaauggcaaaaauagcaauuauuuuuguaccagccuaguaucuuuucuccuucuaccaaacuuugucccugagccaucuc
.((((((((((((((((((.....((((((((((((((((((((((((((...(((((((((((....)))))))))))...))))))))))))))))))))))))))................))))))))).....))))))))).

Structure
c         -----         -----------caccc                          GGA           a 
 agauggcuc     cgaaguuug                uauuagguuggugcAAAAGUAAUUGC   UUUUGCCauua a
 |||||||||     |||||||||                ||||||||||||||||||||||||||   |||||||||||  
 ucuaccgag     guuucaaac                augauccgaccauguuuuuauuaacg   aaaacgguaau c
c         ucccu         caucuuccucuuuucu                          aua           g 


Annotation confidence Not enough data
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Genome context
chr3: 129014854-129015001 [-]

Database links

Mature ptr-miR-548i

Accession MIMAT0008223
Description Pan troglodytes ptr-miR-548i mature miRNA
Sequence 39 - AAAAGUAAUUGCGGAUUUUGCC - 60
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70