miRBase entry: ptr-mir-548i-2

Stem-loop ptr-mir-548i-2


Accession
MI0008754
Description
Pan troglodytes ptr-mir-548i-2 precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
1 open access papers mention ptr-mir-548i-2
(2 sentences)

Sequence

cagauggcuccgaaguuugcauccuauuagguuggugcAAAAGUAAUUGCGGAUUUUGCCauuaaaaguaacggcaaaaacagcaauuauuuuuguaccagccuaguaucuuuucuccuucuaccaaacuuugucccugagccaucuc
.((((((((((((((((((.....((((((((((((((((((((((((((.(.(((((((.(((....))).))))))).).))))))))))))))))))))))))))................))))))))).....))))))))).

Structure
c         -----         -----------caucc                          G A       a   a 
 agauggcuc     cgaaguuug                uauuagguuggugcAAAAGUAAUUGC G UUUUGCC uua a
 |||||||||     |||||||||                |||||||||||||||||||||||||| | ||||||| |||  
 ucuaccgag     guuucaaac                augauccgaccauguuuuuauuaacg c aaaacgg aau a
c         ucccu         caucuuccucuuuucu                          a a       c   g 


Annotation confidence Not enough data
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Genome context
chr3: 15500930-15501077 [-]

Database links

Mature ptr-miR-548i

Accession MIMAT0008223
Description Pan troglodytes ptr-miR-548i mature miRNA
Sequence 39 - AAAAGUAAUUGCGGAUUUUGCC - 60
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70