miRBase entry: ptr-mir-548i-4

Stem-loop ptr-mir-548i-4


Accession
MI0008756
Description
Pan troglodytes ptr-mir-548i-4 precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
1 open access papers mention ptr-mir-548i-4
(2 sentences)

Sequence

cagauggcuccgaaguuugcauccuauuagguuggugcAAAAGUAAUUGCGGAUUUUGCCauuaaaaguaauggcaaaaauaacaauuauuuuuuuuaccagccuaguaucuuuucuccuuuaccaaacuuugucccugaaucaucuc
.((((((.(((((((((((.....(((((((((((((.(((((((((((....(((((((((((....)))))))))))....)))))))))))..)))))))))))))...............))))))))).....)).)))))).

Structure
c      c  -----         ----------caucc             -c           CGGA           a 
 agaugg uc     cgaaguuug               uauuagguuggug  AAAAGUAAUUG    UUUUGCCauua a
 |||||| ||     |||||||||               |||||||||||||  |||||||||||    |||||||||||  
 ucuacu ag     guuucaaac               augauccgaccau  uuuuuauuaac    aaaacgguaau a
c      a  ucccu         cauuuccucuuuucu             uu           aaua           g 


Annotation confidence Not enough data
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Genome context
chr8: 7418189-7418336 [-]

Database links

Mature ptr-miR-548i

Accession MIMAT0008223
Description Pan troglodytes ptr-miR-548i mature miRNA
Sequence 39 - AAAAGUAAUUGCGGAUUUUGCC - 60
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70