miRBase entry: ptr-mir-548j

Stem-loop ptr-mir-548j


Accession
MI0008759
Description
Pan troglodytes ptr-mir-548j precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
1 open access papers mention ptr-mir-548j
(2 sentences)

Sequence

gggcagccagugaauaguuagcuggugcAAAAGUAAUUGCGGUCUUUGauauuacuuucaauggcaaaaacugcauuacuuuugcaccagccuacuagaacgcugaguuca
((((...(((((..((((..(((((((((((((((((.(((((.((((.((((......)))).)))).))))))))))))))))))))))..))))...))))).)))).

Structure
-    agc     -aa    ua                 U     C    a    ac 
 gggc   cagug   uagu  gcuggugcAAAAGUAAU GCGGU UUUG uauu  u
 ||||   |||||   ||||  ||||||||||||||||| ||||| |||| ||||   
 cuug   gucgc   auca  cgaccacguuuucauua cguca aaac guaa  u
a    --a     aag    uc                 -     a    g    cu 


Annotation confidence Not enough data
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Genome context
chr22: 13088316-13088426 [-]

Database links

Mature ptr-miR-548j

Accession MIMAT0008224
Description Pan troglodytes ptr-miR-548j mature miRNA
Sequence 29 - AAAAGUAAUUGCGGUCUUUG - 48
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70