Stem-loop ptr-mir-548k

Accession

MI0008760

Description

Pan troglodytes ptr-mir-548k precursor miRNA

Gene family

MIPF0000317; mir-548

Literature search

1 open access papers mention ptr-mir-548k
(2 sentences)

Sequence

uuuucucaaguauugcuguuagguuggugcAAAAGUACUUGCGGAUUUUGCUuuacuuuuaauggcaaaaaccgcaauuauuuuugcuucaaccuaauaugaugcaaaauuggcu
.........((((((.(((((((((((.(((((((((.((((((.(((((((...........))))))).)))))).))))))))).)))))))))))))))))..........

Structure

-uuuucucaa      c           u         C      A       uuac 
          guauug uguuagguugg gcAAAAGUA UUGCGG UUUUGCU    u
          |||||| ||||||||||| ||||||||| |||||| |||||||    u
          cguagu auaauccaacu cguuuuuau aacgcc aaaacgg    u
ucgguuaaaa      -           u         u      a       uaau 

Annotation confidence Not enough data

Genome context

chr11: 70178759-70178873 [+]

Mature ptr-miR-548k

• Accession: MIMAT0008225
• Description: Pan troglodytes ptr-miR-548k mature miRNA
• Sequence: 31 - AAAAGUACUUGCGGAUUUUGCU - 52
• Evidence: not_experimental

References

1. PubMed ID: 18760970
   Computational identification of novel microRNA homologs in the chimpanzee genome
   "Baev V, Daskalova E, Minkov I"
   "Comput Biol Chem (2009) 33:62-70