miRBase entry: ptr-mir-548l

Stem-loop ptr-mir-548l


Accession
MI0008761
Description
Pan troglodytes ptr-mir-548l precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
1 open access papers mention ptr-mir-548l
(2 sentences)

Sequence

uauuagguuggugcAAAAGUAUUUGCGGGUUUUGUCauagaaaguaauggcaaaaacugcaguuacuugugcaccaaccaaaugc
((((.((((((((((.(((((.((((((..((((((((........))))))))..)))))).))))).)))))))))).)))).

Structure
-    a          A     U      GU        aga 
 uauu gguuggugcA AAGUA UUGCGG  UUUGUCau   a
 |||| |||||||||| ||||| ||||||  ||||||||    
 guaa ccaaccacgu uucau gacguc  aaacggua   a
c    a          g     u      aa        aug 


Annotation confidence Not enough data
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Genome context
chr11: 94539922-94540006 [-]

Database links

Mature ptr-miR-548l

Accession MIMAT0008226
Description Pan troglodytes ptr-miR-548l mature miRNA
Sequence 15 - AAAAGUAUUUGCGGGUUUUGUC - 36
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70