miRBase entry: ptr-mir-548n

Stem-loop ptr-mir-548n


Accession
MI0008762
Description
Pan troglodytes ptr-mir-548n precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
1 open access papers mention ptr-mir-548n
(2 sentences)

Sequence

agguugaugCAAAAGUAAUUGUGGAUUUUGUcguuaaaaaauagcaaaacccgcaauuacuuuugcaccaaccua
((((((.(((((((((((((((((.((((((.(((....))).)))))).))))))))))))))))).)))))).

Structure
-      a                 A      c   a 
 agguug ugCAAAAGUAAUUGUGG UUUUGU guu a
 |||||| ||||||||||||||||| |||||| |||  
 uccaac acguuuucauuaacgcc aaaacg uaa a
a      c                 c      a   a 


Annotation confidence Not enough data
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Genome context
KV420936.1: 246113-246187 [+]

Database links

Mature ptr-miR-548n

Accession MIMAT0008227
Description Pan troglodytes ptr-miR-548n mature miRNA
Sequence 10 - CAAAAGUAAUUGUGGAUUUUGU - 31
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70