miRBase entry: ptr-mir-548p

Stem-loop ptr-mir-548p


Accession
MI0008763
Description
Pan troglodytes ptr-mir-548p precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
1 open access papers mention ptr-mir-548p
(2 sentences)

Sequence

auuagguugguauaaaauuaauugcaguuuuugucauuacuuucaaUAGCAAAAACUGCAGUUACUUUugcaccaauguaaua
((((.((((((.(((((.((((((((((((((((.(((......))).)))))))))))))))).))))).)))))).)))).

Structure
-    g      a     u                c   ac 
 auua guuggu uaaaa uaauugcaguuuuugu auu  u
 |||| |||||| ||||| |||||||||||||||| |||   
 uaau uaacca guUUU AUUGACGUCAAAAACG Uaa  u
a    g      c     C                A   cu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr5: 100119979-100120061 [-]

Database links

Mature ptr-miR-548p

Accession MIMAT0008228
Description Pan troglodytes ptr-miR-548p mature miRNA
Sequence 47 - UAGCAAAAACUGCAGUUACUUU - 68
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70