miRBase entry: ptr-mir-549

Stem-loop ptr-mir-549


Accession
MI0008764
Description
Pan troglodytes ptr-mir-549 precursor miRNA
Gene family
MIPF0000470; mir-549


Sequence

agacaugcaacucaagaauauauugagagcucauccauaguugucacugucucagaucagUGACAACUAUGGAUGAGCUCUuaauauaucccagg
.................((((((((((((((((((((((((((((((((........))))))))))))))))))))))))))))))))......

Structure
agacaugcaacucaaga                                ucu 
                 auauauugagagcucauccauaguugucacug   c
                 ||||||||||||||||||||||||||||||||    
                 uauauaauUCUCGAGUAGGUAUCAACAGUgac   a
-----------ggaccc                                uag 


Annotation confidence Not enough data
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Genome context
chr15: 61963151-61963245 [-]

Database links

Mature ptr-miR-549

Accession MIMAT0008229
Description Pan troglodytes ptr-miR-549 mature miRNA
Sequence 61 - UGACAACUAUGGAUGAGCUCU - 81
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70