miRBase entry: ptr-mir-550-1

Stem-loop ptr-mir-550-1


Accession
MI0008765
Description
Pan troglodytes ptr-mir-550-1 precursor miRNA
Gene family
MIPF0000334; mir-550


Sequence

ugaugcuuugcuggcuggugcAGUGCCUGAGGGAGUAAGAGCCCuguuguuguaagauagugucuuacucccucaggcacaucuccaacaagucuc
....(((.....)))(((.(..((((((((((((((((((.(.(((((.......))))).)))))))))))))))))))..).))).........

Structure
ugaugcuuugcuggc   u cA                  G C     gu 
               ugg g  GUGCCUGAGGGAGUAAGA C Cuguu  u
               ||| |  |||||||||||||||||| | |||||  g
               acc c  cacggacucccucauucu g gauag  u
------cucugaaca   u ua                  - u     aa 


Annotation confidence Not enough data
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Genome context
chr7: 28838042-28838137 [-]

Database links

Mature ptr-miR-550

Accession MIMAT0008230
Description Pan troglodytes ptr-miR-550 mature miRNA
Sequence 22 - AGUGCCUGAGGGAGUAAGAGCCC - 44
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70