miRBase entry: ptr-mir-551b

Stem-loop ptr-mir-551b


Accession
MI0008769
Description
Pan troglodytes ptr-mir-551b precursor miRNA
Gene family
MIPF0000360; mir-551


Sequence

gaugugcucuccuggcccaugaaaucaagcgugggugagaccuggugcagaacgggaagGCGACCCAUACUUGGUUUCAGaggcugcgagaaua
.......((((.(((((..((((((((((.((((((....((((........))))......)))))).))))))))))..))))).))))...

Structure
gaugugc    c     ca          c      --gaga    gug 
       ucuc uggcc  ugaaaucaag gugggu      ccug   c
       |||| |||||  |||||||||| ||||||      ||||    
       agag gucgg  ACUUUGGUUC UACCCA      gggc   a
----aua    c     aG          A      GCGgaa    aag 


Annotation confidence Not enough data
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Genome context
chr3: 172245358-172245451 [+]

Database links

Mature ptr-miR-551b

Accession MIMAT0008232
Description Pan troglodytes ptr-miR-551b mature miRNA
Sequence 60 - GCGACCCAUACUUGGUUUCAG - 80
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70