miRBase entry: ptr-mir-553

Stem-loop ptr-mir-553


Accession
MI0008771
Description
Pan troglodytes ptr-mir-553 precursor miRNA
Gene family
MIPF0000487; mir-553


Sequence

uucaauuuuauuuuAAAACGGUGAGAUUUUGUUUUgucugagaaaaucucgcuguuuuagacugagg
......((((.(((((((((((((((((((.((......)).))))))))))))))))))).)))).

Structure
uucaau    u                   G  UU 
      uuua uuuAAAACGGUGAGAUUUU UU  g
      |||| ||||||||||||||||||| ||   
      gagu agauuuugucgcucuaaaa ag  u
-----g    c                   g  uc 


Annotation confidence Not enough data
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Genome context
chr1: 100917470-100917536 [+]

Database links

Mature ptr-miR-553

Accession MIMAT0008234
Description Pan troglodytes ptr-miR-553 mature miRNA
Sequence 15 - AAAACGGUGAGAUUUUGUUUU - 35
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70