miRBase entry: ptr-mir-555

Stem-loop ptr-mir-555


Accession
MI0008773
Description
Pan troglodytes ptr-mir-555 precursor miRNA
Gene family
MIPF0000583; mir-555


Sequence

ggagugaacucagauguggagcacuaccuuugugagcagugugacccaaggccuguggacAGGGUAAGCUGAACCUCUGAUaaaacucugaucua
(((((....(((((.((..(((..((((((.((..((((.((........))))))..)))))))).)))..)).)))))....)))))......

Structure
------     gaac     u  gg   ac      u  ga    u  gac 
      ggagu    ucaga gu  agc  uaccuu gu  gcag gu   c
      |||||    ||||| ||  |||  |||||| ||  |||| ||    
      ucuca    AGUCU CA  UCG  AUGGGA ca  uguc cg   c
aucuag     aaaU     C  AG   -A      -  gg    -  gaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 133436413-133436507 [-]

Database links

Mature ptr-miR-555

Accession MIMAT0008236
Description Pan troglodytes ptr-miR-555 mature miRNA
Sequence 61 - AGGGUAAGCUGAACCUCUGAU - 81
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70