miRBase entry: ptr-mir-557

Stem-loop ptr-mir-557


Accession
MI0008775
Description
Pan troglodytes ptr-mir-557 precursor miRNA
Gene family
MIPF0000520; mir-557


Sequence

gaaugggcaaaugaacaguaaauuuagaggccuggggcccucccugcugcuggagaaguGUUUGCACGGGUGGGCCUUGUCUuugaaaggaggugga
...((..(....)..)).....(((((((((..(((((((.((((((((((.....))))...))).))).))))))))))))))))..........

Structure
gaaugggcaaaugaacaguaaa         cu       u   -   ---    g 
                      uuuagaggc  ggggccc ccc ugc   ugcu g
                      |||||||||  ||||||| ||| |||   |||| a
                      aaguuUCUG  UUCCGGG GGG ACG   Guga g
------------agguggagga         --       U   C   UUU    a 


Annotation confidence Not enough data
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Genome context
chr1: 146628440-146628536 [+]

Database links

Mature ptr-miR-557

Accession MIMAT0008238
Description Pan troglodytes ptr-miR-557 mature miRNA
Sequence 60 - GUUUGCACGGGUGGGCCUUGUCU - 82
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70