miRBase entry: ptr-mir-558

Stem-loop ptr-mir-558


Accession
MI0008776
Description
Pan troglodytes ptr-mir-558 precursor miRNA
Gene family
MIPF0000538; mir-558


Sequence

ugugugugugugugugugguuauuuugguauaguagcucuagacucuauuauaguuuccUGAGCUGCUGUACCAAAAUaccacaaaugggcug
.......((.(((.((((((.((((((((((((((((((..((..(((...)))..))..)))))))))))))))))))))))).))).))..

Structure
ugugugu  g   g      u                  ua  cu   u 
       gu ugu uguggu auuuugguauaguagcuc  ga  cua  
       || ||| |||||| ||||||||||||||||||  ||  ||| u
       cg gua acacca UAAAACCAUGUCGUCGAG  cu  gau  
-----gu  g   a      -                  Uc  uu   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2A: 33181243-33181335 [+]

Database links

Mature ptr-miR-558

Accession MIMAT0008239
Description Pan troglodytes ptr-miR-558 mature miRNA
Sequence 60 - UGAGCUGCUGUACCAAAAU - 78
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70