miRBase entry: ptr-mir-562

Stem-loop ptr-mir-562


Accession
MI0008779
Description
Pan troglodytes ptr-mir-562 precursor miRNA
Gene family
MIPF0000512; mir-562


Sequence

gugaaauugcuaggucauauggucagucuacuuuuagaguaauugugaaacuguuuuucAAAGUAGCUGUACCAUUUGCacucccuguggcaau
.....((((((((((((.((((((((.(((((((..(((.(((.((...)).))).))))))))))))).))))).)).))).....)))))))

Structure
gugaa       -----   -  u     -   u       ua   u   u  g 
     auugcua     ggu ca auggu cag cuacuuu  gag aau gu  
     |||||||     ||| || ||||| ||| |||||||  ||| ||| || a
     uaacggu     uca GU UACCA GUC GAUGAAA  cuu uug ca  
-----       guccc   C  U     U   -       --   u   u  a 


Annotation confidence Not enough data
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Genome context
chr2B: 123249177-123249270 [+]

Database links

Mature ptr-miR-562

Accession MIMAT0008242
Description Pan troglodytes ptr-miR-562 mature miRNA
Sequence 60 - AAAGUAGCUGUACCAUUUGC - 79
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70