miRBase entry: ptr-mir-580

Stem-loop ptr-mir-580


Accession
MI0008790
Description
Pan troglodytes ptr-mir-580 precursor miRNA
Gene family
MIPF0000515; mir-580


Sequence

uaaaauuuccaauuggaaccuaaugauucaucagacucagauauuuaaguuaacaguauUUGAGAAUGAUGAAUCAUUAGGuuccagucagaaauu
...((((((..((((((((((((((((((((((..((((((((((.........))))))))))..))))))))))))))))))))))..))))))

Structure
uaa      ca                      ga          uaa 
   aauuuc  auuggaaccuaaugauucauca  cucagauauu   g
   ||||||  ||||||||||||||||||||||  ||||||||||   u
   uuaaag  ugaccuuGGAUUACUAAGUAGU  GAGUUuauga   u
---      ac                      AA          caa 


Annotation confidence Not enough data
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Genome context
chr5: 78172007-78172102 [+]

Database links

Mature ptr-miR-580

Accession MIMAT0008253
Description Pan troglodytes ptr-miR-580 mature miRNA
Sequence 60 - UUGAGAAUGAUGAAUCAUUAGG - 81
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70