miRBase entry: ptr-mir-593

Stem-loop ptr-mir-593


Accession
MI0008801
Description
Pan troglodytes ptr-mir-593 precursor miRNA
Gene family
MIPF0000503; mir-593


Sequence

ccccagaaucugucaggcaccagccaggcauugcucagccccuuucccucugggggagcaaggaguggugcuggguuUGUCUCUGCUGGGGUUUCUccu
((((((.....(.(((((.(((((((..(.((((((..((((.........)))))))))).)..))..)))))))))).)....))))))........

Structure
--------      aaucu u     a     --  gg a      ag    uuu 
        ccccag     g caggc ccagc  ca  c uugcuc  cccc   c
        ||||||     | ||||| |||||  ||  | ||||||  ||||   c
        GGGGUC     C GUuug ggucg  gu  g aacgag  gggg   c
uccUCUUU      -GUCU U     -     ug  ga g      --    ucu 


Annotation confidence Not enough data
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Genome context
chr7: 132632943-132633041 [+]

Database links

Mature ptr-miR-593

Accession MIMAT0008264
Description Pan troglodytes ptr-miR-593 mature miRNA
Sequence 78 - UGUCUCUGCUGGGGUUUCU - 96
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70