miRBase entry: ptr-mir-599

Stem-loop ptr-mir-599


Accession
MI0008805
Description
Pan troglodytes ptr-mir-599 precursor miRNA
Gene family
MIPF0000502; mir-599


Sequence

aaagacaugcuguccacaguguguuugauaagcugacaugggacagggauucuuuucacuGUUGUGUCAGUUUAUCAAACccauacuuggauga
...........(((((.((((((((((((((((((((((..((((((((.....))).))))))))))))))))))))))..))))))))))..

Structure
aaagacaugcu     c     --                 gg     -   u 
           gucca agugu  guuugauaagcugacau  gacag gga u
           ||||| |||||  |||||||||||||||||  ||||| ||| c
           uaggu ucaua  CAAACUAUUUGACUGUG  UUGuc cuu u
---------ag     -     cc                 --     a   u 


Annotation confidence Not enough data
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Genome context
chr8: 101393471-101393564 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-599
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-599

Accession MIMAT0008268
Description Pan troglodytes ptr-miR-599 mature miRNA
Sequence 61 - GUUGUGUCAGUUUAUCAAAC - 80
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70