miRBase entry: ptr-mir-621

Stem-loop ptr-mir-621


Accession
MI0008819
Description
Pan troglodytes ptr-mir-621 precursor miRNA
Gene family
MIPF0000631; mir-621


Sequence

agauugaggaaggggcugagugguagguggugcugcugugcucugaugaagacccauguGGCUAGCAACAGCGCUUACCUuuugucucugggucc
.....((...((((((.(((.((((((((.((.(((((.(((...(((......)))..)))))))).)).))))))))))).))))))...)).

Structure
agauu  gga      u   u        g  c     u   cug   aa 
     ga   aggggc gag gguaggug ug ugcug gcu   aug  g
     ||   |||||| ||| |||||||| || ||||| |||   |||   
     cu   ucucug uuU CCAUUCGC AC ACGAU CGG   uac  a
----c  ggg      u   -        G  A     -   -ug   cc 


Annotation confidence Not enough data
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Genome context
chr13: 25640915-25641009 [+]

Database links

Mature ptr-miR-621

Accession MIMAT0008282
Description Pan troglodytes ptr-miR-621 mature miRNA
Sequence 60 - GGCUAGCAACAGCGCUUACCU - 80
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70