miRBase entry: ptr-mir-645

Stem-loop ptr-mir-645


Accession
MI0008835
Description
Pan troglodytes ptr-mir-645 precursor miRNA
Gene family
MIPF0000657; mir-645


Sequence

aguuccuaacaggccucagaccaguaccggucuguggccuggggguugaggaccccugcUCUAGGCUGGUACUGCUGAugcuuaaaaagagag
...((((...((((.((((..(((((((((((((.(((..(((((((...)))))))))).))))))))))))))))).))))....)).)).

Structure
agu  -  -aac    c    ac             u   cu       g 
   uc cu    aggc ucag  caguaccggucug ggc  ggggguu  
   || ||    |||| ||||  ||||||||||||| |||  ||||||| a
   ag ga    uucg AGUC  GUCAUGGUCGGAU Ucg  uccccag  
--g  a  aaaa    u    --             C   --       g 


Annotation confidence Not enough data
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Genome context
chr20: 52360304-52360396 [+]

Database links

Mature ptr-miR-645

Accession MIMAT0008298
Description Pan troglodytes ptr-miR-645 mature miRNA
Sequence 60 - UCUAGGCUGGUACUGCUGA - 78
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70