miRBase entry: ptr-mir-646

Stem-loop ptr-mir-646


Accession
MI0008836
Description
Pan troglodytes ptr-mir-646 precursor miRNA
Gene family
MIPF0000605; mir-646


Sequence

aucaggagucugccaguggagucagcacaccugcuuuucaccugugaucccaggagaggAAGCAGCUGCCUCUGAGGCcucaggcucagugg
..((.(((((((((..(((((.((((.....((((((((.((((......)))).)).)))))))))).))))).)))...))))))..)).

Structure
au  -g      ---   ag     u    acacc      -  a    ug 
  ca  gagucu   gcc  uggag cagc     ugcuuu uc ccug  a
  ||  ||||||   |||  ||||| ||||     |||||| || ||||   
  gu  cucgga   CGG  GUCUC GUCG     ACGAAg ag ggac  u
-g  ga      cuc   -A     C    -----      g  a    cc 


Annotation confidence Not enough data
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Genome context
chr20: 62376076-62376167 [+]

Database links

Mature ptr-miR-646

Accession MIMAT0008299
Description Pan troglodytes ptr-miR-646 mature miRNA
Sequence 60 - AAGCAGCUGCCUCUGAGGC - 78
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70