miRBase entry: ptr-mir-649

Stem-loop ptr-mir-649


Accession
MI0008837
Description
Pan troglodytes ptr-mir-649 precursor miRNA
Gene family
MIPF0000547; mir-649


Sequence

ggccuagacaaauacuguauuuuugaucaauauuugguugaaaaauaucuauguauuaguAAACCUGUGUUGUUCAAGAGUCcacuguguuuugcu
(((..(((((.....((.((((((((.((((((..((((....(((((....)))))....)))).)))))).)))))))).))...))))).)))

Structure
   cu     aauac  u        u      uu    gaaa     c 
ggc  agaca     ug auuuuuga caauau  gguu    aauau u
|||  |||||     || |||||||| ||||||  ||||    |||||  
ucg  uuugu     ac UGAGAACU GUUGUG  CCAA    uuaug a
   -u     --guc  C        U      -U    Auga     u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr22: 7583236-7583331 [-]

Database links

Mature ptr-miR-649

Accession MIMAT0008300
Description Pan troglodytes ptr-miR-649 mature miRNA
Sequence 61 - AAACCUGUGUUGUUCAAGAGUC - 82
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70