miRBase entry: ptr-mir-656

Stem-loop ptr-mir-656


Accession
MI0008842
Description
Pan troglodytes ptr-mir-656 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

ugaaauagguugccugugagguguucacuuucuauaugaugAAUAUUAUACAGUCAACCUCUuuccgauaucgaauc
.((((.((((((.(((((.((((((((...((.....)))))))))).))))).)))))).))))............

Structure
-----------u    u      c     a        cuu  u 
            gaaa agguug cugug gguguuca   uc a
            |||| |||||| ||||| ||||||||   || u
            cuuU UCCAAC GACAU UUAUAAgu   ag a
cuaagcuauagc    C      U     A        ---  u 


Annotation confidence Not enough data
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Genome context
chr14: 86314977-86315053 [+]
Clustered miRNAs
7 other miRNAs are < 10 kb from ptr-mir-656
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-656

Accession MIMAT0008305
Description Pan troglodytes ptr-miR-656 mature miRNA
Sequence 42 - AAUAUUAUACAGUCAACCUCU - 62
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70