miRBase entry: ptr-mir-657

Stem-loop ptr-mir-657


Accession
MI0008843
Description
Pan troglodytes ptr-mir-657 precursor miRNA
Gene family
MIPF0000498; mir-657


Sequence

guguaguagagcuaggaggagaggguccuggagaagcguggaccgguccgggaggguuccGGCAGGUUCUCACCCUCUCUAGGccccauucuccucu
...((((...))))(((((((((((.((((((((.(.(((((((.(.((((((...))))))).)).)).)))).)))))))).)))..))))))))

Structure
guguaguagagcua        --   u        a c   -  -  g u      g 
              ggaggaga  ggg ccuggaga g gug ga cc g ccggga  
              ||||||||  ||| |||||||| | ||| || || | |||||| g
              ucuccucu  ccc GGAUCUCU C CAC CU GG C GGccuu  
--------------        ua   c        C -   U  U  A -      g 


Annotation confidence Not enough data
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Genome context
chr17: 80830263-80830359 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptr-mir-657
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-657

Accession MIMAT0008306
Description Pan troglodytes ptr-miR-657 mature miRNA
Sequence 61 - GGCAGGUUCUCACCCUCUCUAGG - 83
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70