miRBase entry: ptr-mir-658

Stem-loop ptr-mir-658


Accession
MI0008844
Description
Pan troglodytes ptr-mir-658 precursor miRNA
Gene family
MIPF0000643; mir-658


Sequence

gcucgguugccgugguugcgggcccggcccgcccgccagcucgcugacagcacgacucagGGCGGAGGGAAGUAGGUCCGUUGGccgguugggaacgag
.((((.((.(((((((.((((((((..(((..(((((((.(((.((....)))))))...))))).)))..)..)))))))..))))..))).))))))

Structure
g    g  g   --    -u       -- gg   gc     ---  c   c  a 
 cucg uu ccg  uggu  gcgggcc  c  ccc  ccgcc   ag ucg ug c
 |||| || |||  ||||  |||||||  |  |||  |||||   || ||| ||  
 gagc aa ggu  gccG  UGCCUGG  G  GGG  GGCGG   uc agc ac a
-    -  g   ug    GU       AU AA   -A     gac  -   -  g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr22: 24390227-24390325 [-]

Database links

Mature ptr-miR-658

Accession MIMAT0008307
Description Pan troglodytes ptr-miR-658 mature miRNA
Sequence 61 - GGCGGAGGGAAGUAGGUCCGUUGG - 84
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70