miRBase entry: ptr-mir-660

Stem-loop ptr-mir-660


Accession
MI0008845
Description
Pan troglodytes ptr-mir-660 precursor miRNA
Gene family
MIPF0000113; mir-188


Sequence

ugcuccuucucccaUACCCAUUGCAUAUCGGAGUUGugaauucucaaaacaccuccugugugcauggauuacaggagggugagccuugucaucgug
.((((.((((((.....((((.((((((.((((.(((...........))).)))).))))))))))......)))))).))))............

Structure
-----------u    c      -caUAC    U      C    U   gaau 
            gcuc uucucc      CCAU GCAUAU GGAG UGu    u
            |||| ||||||      |||| |||||| |||| |||    c
            cgag gggagg      ggua cgugug ccuc aca    u
gugcuacuguuc    u      acauua    -      u    c   aaac 


Annotation confidence Not enough data
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Genome context
chrX: 49897995-49898090 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from ptr-mir-660
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-660

Accession MIMAT0008308
Description Pan troglodytes ptr-miR-660 mature miRNA
Sequence 15 - UACCCAUUGCAUAUCGGAGUUG - 36
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70