miRBase entry: ptr-mir-7-2

Stem-loop ptr-mir-7-2


Accession
MI0008854
Description
Pan troglodytes ptr-mir-7-2 precursor miRNA
Gene family
MIPF0000022; mir-7


Sequence

uggauacagagcggaccggcuggccccaucUGGAAGACUAGUGAUUUUGUUGUugucuuacugcgcucaacaacaaaucccagucuaccuaauggugccagccaucgca
..........((((...(((((((.((((..((.(((((.(.(((((.(((((((............))))))))))))).))))).))..)))).))))))).)))).

Structure
uggauacaga    acc       c    cU  A     A U     U       ucuua 
          gcgg   ggcuggc ccau  GG AGACU G GAUUU GUUGUug     c
          ||||   ||||||| ||||  || ||||| | ||||| |||||||      
          cgcu   ccgaccg ggua  cc ucuga c cuaaa caacaac     u
---------a    --a       u    au  a     c -     -       ucgcg 


Annotation confidence Not enough data
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Genome context
chr15: 69337088-69337196 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-7-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-7

Accession MIMAT0002485
Description Pan troglodytes ptr-miR-7 mature miRNA
Sequence 31 - UGGAAGACUAGUGAUUUUGUUGU - 53
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70