miRBase entry: ptr-mir-875

Stem-loop ptr-mir-875


Accession
MI0008865
Description
Pan troglodytes ptr-mir-875 precursor miRNA
Gene family
MIPF0000424; mir-875


Sequence

uuagugguacUAUACCUCAGUUUUAUCAGGUGuucuuaaaaucaccuggaaauacugagguugugucucacugaa
(((((((.((...((((((((.((.(((((((..........))))))).)).))))))))...)).))))))).

Structure
-       u  UAU        U  A       uucu 
 uuagugg ac   ACCUCAGU UU UCAGGUG    u
 ||||||| ||   |||||||| || |||||||     
 agucacu ug   uggaguca aa gguccac    a
a       c  ugu        u  a       uaaa 


Annotation confidence Not enough data
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Genome context
chr8: 101393621-101393695 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-875
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-875

Accession MIMAT0008326
Description Pan troglodytes ptr-miR-875 mature miRNA
Sequence 11 - UAUACCUCAGUUUUAUCAGGUG - 32
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70