miRBase entry: ptr-mir-889

Stem-loop ptr-mir-889


Accession
MI0008870
Description
Pan troglodytes ptr-mir-889 precursor miRNA
Gene family
MIPF0000514; mir-889


Sequence

ugcuuaaagaauggcuguccguaguauggucucuauauuuaugaugaUUAAUAUCGGACAACCAUUGUuuuaguaucc
((((.(((.(((((.((((((..((.(((((((.........)).)))))))..)))))).))))).))).))))...

Structure
---    u   g     c      ua  a     -  uau 
   ugcu aaa aaugg uguccg  gu ugguc uc   a
   |||| ||| ||||| ||||||  || ||||| ||   u
   auga uuU UUACC ACAGGC  UA AUUag ag   u
ccu    u   G     A      UA  -     u  uau 


Annotation confidence Not enough data
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Genome context
chr14: 86296136-86296213 [+]
Clustered miRNAs
19 other miRNAs are < 10 kb from ptr-mir-889
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-889

Accession MIMAT0008331
Description Pan troglodytes ptr-miR-889 mature miRNA
Sequence 48 - UUAAUAUCGGACAACCAUUGU - 68
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70