miRBase entry: ptr-mir-890

Stem-loop ptr-mir-890


Accession
MI0008871
Description
Pan troglodytes ptr-mir-890 precursor miRNA
Gene family
MIPF0000386; mir-743


Sequence

ggaagugcccUACUUGGAAAGGCAUCAGUUGcuuagauuacauguaacuauucccuuucugaguagaguaagucuu
(((..(((.(((((((((((((.(..((((((...........))))))..).))))))))))))).)))..))).

Structure
-   ag   c             C UC      uuag 
 gga  ugc cUACUUGGAAAGG A  AGUUGc    a
 |||  ||| ||||||||||||| |  ||||||    u
 ucu  aug gaugagucuuucc u  ucaaug    u
u   ga   a             c ua      uaca 


Annotation confidence Not enough data
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Genome context
chrX: 145721071-145721146 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from ptr-mir-890
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-890

Accession MIMAT0008332
Description Pan troglodytes ptr-miR-890 mature miRNA
Sequence 11 - UACUUGGAAAGGCAUCAGUUG - 31
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70