miRBase entry: ptr-mir-892a

Stem-loop ptr-mir-892a


Accession
MI0008874
Description
Pan troglodytes ptr-mir-892a precursor miRNA
Gene family
MIPF0000386; mir-743


Sequence

cagugccuuacucagaaaggugccaguaacuuacacuacauguCACUGUGUCCUUUCUGCGUAGaguaaggcu
....((((((((((((((((.((((((.((...........)).)))).))))))))).....))))))))).

Structure
cagu         -----       u  -    a  uuac 
    gccuuacuc     agaaagg gc cagu ac    a
    |||||||||     ||||||| || |||| ||    c
    cggaaugaG     UCUUUCC UG GUCA ug    u
---u         AUGCG       -  U    C  uaca 


Annotation confidence Not enough data
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Genome context
chrX: 145723140-145723212 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from ptr-mir-892a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-892a

Accession MIMAT0008335
Description Pan troglodytes ptr-miR-892a mature miRNA
Sequence 44 - CACUGUGUCCUUUCUGCGUAG - 64
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70