miRBase entry: ptr-mir-9-1

Stem-loop ptr-mir-9-1


Accession
MI0008875
Description
Pan troglodytes ptr-mir-9-1 precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
1 open access papers mention ptr-mir-9-1
(1 sentences)

Sequence

cgggguugguuguuaUCUUUGGUUAUCUAGCUGUAUGAgugguguggagucuucauaaagcuagauaaccgaaaguaaaaauaacccc
.(((((((....((((.(((((((((((((((.((((((.(.(....).).)))))).))))))))))))))).))))...)))))))

Structure
c       guug    C               G      u g g 
 gggguug    uuaU UUUGGUUAUCUAGCU UAUGAg g u u
 |||||||    |||| ||||||||||||||| |||||| | |  
 ccccaau    aaug aagccaauagaucga auacuu u a g
-       -aaa    a               a      c g g 


Annotation confidence Not enough data
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Genome context
chr1: 134550541-134550628 [-]

Database links

Mature ptr-miR-9

Accession MIMAT0002275
Description Pan troglodytes ptr-miR-9 mature miRNA
Sequence 16 - UCUUUGGUUAUCUAGCUGUAUGA - 38
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70