miRBase entry: ptr-mir-939

Stem-loop ptr-mir-939


Accession
MI0008886
Description
Pan troglodytes ptr-mir-939 precursor miRNA
Gene family
MIPF0000490; mir-939


Sequence

ugugggcagggcccUGGGGAGCUGAGGCUCUGGGGGUGgccggggcugacccugggccucugcuccccagugucugaccgc
.((((...((((.(((((((((.(((((.((((((..(((....)))..))))))))))).))))))))).))))..))))

Structure
u    gca    c         U     U      GU   c 
 gugg   gggc cUGGGGAGC GAGGC CUGGGG  Ggc g
 ||||   |||| ||||||||| ||||| ||||||  |||  
 cgcc   ucug gaccccucg cuccg gguccc  ucg g
-    -ag    u         u     -      ag   g 


Annotation confidence Not enough data
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Genome context
chr8: 147198286-147198366 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-939
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-939

Accession MIMAT0008346
Description Pan troglodytes ptr-miR-939 mature miRNA
Sequence 15 - UGGGGAGCUGAGGCUCUGGGGGUG - 38
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70