miRBase entry: ptr-mir-940

Stem-loop ptr-mir-940


Accession
MI0008887
Description
Pan troglodytes ptr-mir-940 precursor miRNA
Gene family
MIPF0000540; mir-940


Sequence

ugaggugugggcccggccccuggagcggggccugggcagccccgugugaugaggaaggAAGGCAGGGCCCCCGCUCCCCgggccugaccccac
((.(((..((((((((.....((((((((((((.(.(..((((.........))..))..).).))).))))))))))))))))).))).)).

Structure
-  a   gu        ccccu         -   g g ag  --  gug 
 ug ggu  gggcccgg     ggagcgggg ccu g c  cc  cc   u
 || |||  ||||||||     ||||||||| ||| | |  ||  ||   g
 ac cca  uccgggCC     CCUCGCCCC GGG C G  gg  gg   a
c  c   -g        -----         C   A G AA  aa  agu 


Annotation confidence Not enough data
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Genome context
chr16: 2468786-2468878 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ptr-mir-940
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-940

Accession MIMAT0008347
Description Pan troglodytes ptr-miR-940 mature miRNA
Sequence 59 - AAGGCAGGGCCCCCGCUCCCC - 79
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70