miRBase entry: ptr-mir-99b

Stem-loop ptr-mir-99b


Accession
MI0008891
Description
Pan troglodytes ptr-mir-99b precursor miRNA
Gene family
MIPF0000033; mir-10


Sequence

gcaccCACCCGUAGAACCGACCUUGCGgggccuucgccgcacacaagcucgugucuguggguccguguc
((((..(((((((((..(((.((((.(.(((....))).)...)))).)))..)))))))))..)))).

Structure
-    cC         AC   C    --C g   c 
 gcac  ACCCGUAGA  CGA CUUG   G ggc u
 ||||  |||||||||  ||| ||||   | |||  
 ugug  ugggugucu  gcu gaac   c ccg u
c    cc         gu   c    aca g   c 


Annotation confidence Not enough data
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Genome context
chr19: 53915419-53915487 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ptr-mir-99b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ptr-miR-99b

Accession MIMAT0008351
Description Pan troglodytes ptr-miR-99b mature miRNA
Sequence 6 - CACCCGUAGAACCGACCUUGCG - 27
Evidence not_experimental

References

  1. PubMed ID: 18760970
    Computational identification of novel microRNA homologs in the chimpanzee genome
    "Baev V, Daskalova E, Minkov I"
    "Comput Biol Chem (2009) 33:62-70