miRBase entry: tca-let-7

Stem-loop tca-let-7


Accession
MI0008896
Description
Tribolium castaneum tca-let-7 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
1 open access papers mention tca-let-7
(5 sentences)

Sequence

gucuguuUGAGGUAGUAGGUUGUAUAGuaaguauuacaccuauugggagugCUGUACAGCCUGCUAACUUUCCCagac
(((((...(((.(((((((((((((((((.........((....))...))))))))))))))))).)))...)))))

Structure
     uuU   G                 aguauuaca  u 
gucug   GAG UAGUAGGUUGUAUAGua         cc a
|||||   ||| |||||||||||||||||         ||  
cagaC   UUC AUCGUCCGACAUGUCgu         gg u
     CCU   A                 ------gag  u 


Annotation confidence Not enough data
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Genome context
ChLG6: 4533422-4533499 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from tca-let-7
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-let-7-5p

Accession MIMAT0008354
Description Tribolium castaneum tca-let-7-5p mature miRNA
Sequence 8 - UGAGGUAGUAGGUUGUAUAG - 27
Evidence experimental
SOLID [2]
Database links

Mature tca-let-7-3p

Accession MIMAT0019098
Description Tribolium castaneum tca-let-7-3p mature miRNA
Sequence 52 - CUGUACAGCCUGCUAACUUUCCC - 74
Evidence experimental
SOLID [2]
Database links

References

  1. PubMed ID: 18651924
    In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
    "Singh J, Nagaraju J"
    "Insect Mol Biol (2008) 17:427-436

  2. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696