miRBase entry: tca-mir-7

Stem-loop tca-mir-7


Accession
MI0008897
Description
Tribolium castaneum tca-mir-7 precursor miRNA
Gene family
MIPF0000022; mir-7


Sequence

ugguguugugUGGAAGACUAGUGAUUUUGUUGUUCuaauuuuuacguaaCAAGGAAUCACUAAUCAUCCCACaaagcc
.(((.(((((.(((.((.(((((((((..((((((..........).))))).))))))))).)).)))))))).)))

Structure
u   g     U   A  C         UG     - uaau 
 ggu uugug GGA GA UAGUGAUUU  UUGUU C    u
 ||| ||||| ||| || |||||||||  ||||| |     
 ccg aaCAC CCU CU AUCACUAAG  AACaa g    u
-   a     -   A  A         -G     u cauu 


Annotation confidence Not enough data
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Genome context
ChLG7: 1803460-1803537 [+]

Database links

Mature tca-miR-7-5p

Accession MIMAT0008355
Description Tribolium castaneum tca-miR-7-5p mature miRNA
Sequence 11 - UGGAAGACUAGUGAUUUUGUUGUUC - 35
Evidence experimental
SOLID [2]
Database links

Mature tca-miR-7-3p

Accession MIMAT0019099
Description Tribolium castaneum tca-miR-7-3p mature miRNA
Sequence 50 - CAAGGAAUCACUAAUCAUCCCAC - 72
Evidence experimental
SOLID [2]
Database links

References

  1. PubMed ID: 18651924
    In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
    "Singh J, Nagaraju J"
    "Insect Mol Biol (2008) 17:427-436

  2. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696