miRBase entry: tca-mir-13a

Stem-loop tca-mir-13a


Accession
MI0008901
Description
Tribolium castaneum tca-mir-13a precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
0 open access papers mention tca-mir-13a
(0 sentences)

Sequence

gagaugcccaagUCGUCAAUUUGGUUGUGAACUCuuaauuuaaacgaUAUCACAGCCACUUUGAUGAGCuugguugucuu
((((((.((((((((((((..(((((((((..((...........))..)))))))))..))))))).))))).))))))

Structure
      c     -       UU         AC  uuaa 
gagaug ccaag UCGUCAA  UGGUUGUGA  UC    u
|||||| ||||| |||||||  |||||||||  ||    u
uucugu gguuC AGUAGUU  ACCGACACU  ag    u
      u     G       UC         AU  caaa 


Annotation confidence Not enough data
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Genome context
ChLG3: 562623-562702 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from tca-mir-13a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-13a-3p

Accession MIMAT0008359
Description Tribolium castaneum tca-miR-13a-3p mature miRNA
Sequence 48 - UAUCACAGCCACUUUGAUGAGC - 69
Evidence experimental
SOLID [2]
Database links

Mature tca-miR-13a-5p

Accession MIMAT0019103
Description Tribolium castaneum tca-miR-13a-5p mature miRNA
Sequence 13 - UCGUCAAUUUGGUUGUGAACUC - 34
Evidence experimental
SOLID [2]
Database links

References

  1. PubMed ID: 18651924
    In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
    "Singh J, Nagaraju J"
    "Insect Mol Biol (2008) 17:427-436

  2. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696