miRBase entry: tca-mir-71

Stem-loop tca-mir-71


Accession
MI0008907
Description
Tribolium castaneum tca-mir-71 precursor miRNA
Gene family
MIPF0000278; mir-71

Literature search
2 open access papers mention tca-mir-71
(2 sentences)

Sequence

gucucuucuUGAAAGACAUGGGUAGUGAGAUguuuaauuaauaaauuuugUCUCACUACCUUGUCUUUCAUGuagcgau
(((.((.(.(((((((((.(((((((((((((((((.....)))))...))))))))))))))))))))).).)).)))

Structure
   u  u u         U            ---     a 
guc cu c UGAAAGACA GGGUAGUGAGAU   guuua u
||| || | ||||||||| ||||||||||||   ||||| u
uag ga G ACUUUCUGU UCCAUCACUCUg   uaaau a
   c  u U         -            uuu     a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
ChLG3: 562386-562464 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from tca-mir-71
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-71-5p

Accession MIMAT0008365
Description Tribolium castaneum tca-miR-71-5p mature miRNA
Sequence 10 - UGAAAGACAUGGGUAGUGAGAU - 31
Evidence experimental
SOLID [2]
Database links

Mature tca-miR-71-3p

Accession MIMAT0019109
Description Tribolium castaneum tca-miR-71-3p mature miRNA
Sequence 51 - UCUCACUACCUUGUCUUUCAUG - 72
Evidence experimental
SOLID [2]
Database links

References

  1. PubMed ID: 18651924
    In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
    "Singh J, Nagaraju J"
    "Insect Mol Biol (2008) 17:427-436

  2. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696