miRBase entry: tca-mir-92b

Stem-loop tca-mir-92b


Accession
MI0008910
Description
Tribolium castaneum tca-mir-92b precursor miRNA
Gene family
MIPF0000013; mir-25

Literature search
1 open access papers mention tca-mir-92b
(7 sentences)

Sequence

cugugucguuuAGGUCGUGUCUUGUGCAACUUGugguuuuuucauuagucaaAUUGCACUUGUCCCGGCCUGcaaggcacag
(((((((...(((((((.(.(..((((((((.((((.....)))).))).....)))))..).).)))))))...)))))))

Structure
       guu       U U UU     -----   U    u 
cuguguc   uAGGUCG G C  GUGCA     ACU Gugg u
|||||||   ||||||| | |  |||||     ||| |||| u
gacacgg   GUCCGGC C G  CACGU     uga uacu u
       aac       C U UU     UAaac   u    u 


Annotation confidence Not enough data
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Genome context
ChLG8: 2516719-2516800 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from tca-mir-92b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-92b-3p

Accession MIMAT0008368
Description Tribolium castaneum tca-miR-92b-3p mature miRNA
Sequence 53 - AUUGCACUUGUCCCGGCCUG - 72
Evidence experimental
SOLID [2]
Database links

Mature tca-miR-92b-5p

Accession MIMAT0019112
Description Tribolium castaneum tca-miR-92b-5p mature miRNA
Sequence 12 - AGGUCGUGUCUUGUGCAACUUG - 33
Evidence experimental
SOLID [2]
Database links

References

  1. PubMed ID: 18651924
    In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
    "Singh J, Nagaraju J"
    "Insect Mol Biol (2008) 17:427-436

  2. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696