miRBase entry: tca-mir-277

Stem-loop tca-mir-277


Accession
MI0008923
Description
Tribolium castaneum tca-mir-277 precursor miRNA
Gene family
MIPF0000156; mir-277

Literature search
1 open access papers mention tca-mir-277
(1 sentences)

Sequence

gugggcucCGUGCCAGAUGCGCGUUUACACugcaccguucuaaagaauucugUAAAUGCACUAUCUGGUACGACAgcccac
(((((((.(((((((((((.(((((((((.......((((....))))..))))))))).).))))))))))..)))))))

Structure
       -c          - C         Cugcacc    u 
gugggcu  CGUGCCAGAU G GCGUUUACA       guuc a
|||||||  |||||||||| | |||||||||       ||||  
cacccgA  GCAUGGUCUA C CGUAAAUgu       uaag a
       CA          U A         -----cu    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
ChLG7: 13758830-13758910 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from tca-mir-277
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-277-3p

Accession MIMAT0008382
Description Tribolium castaneum tca-miR-277-3p mature miRNA
Sequence 53 - UAAAUGCACUAUCUGGUACGACA - 75
Evidence experimental
SOLID [2]
Database links

Mature tca-miR-277-5p

Accession MIMAT0019124
Description Tribolium castaneum tca-miR-277-5p mature miRNA
Sequence 9 - CGUGCCAGAUGCGCGUUUACAC - 30
Evidence experimental
SOLID [2]
Database links

References

  1. PubMed ID: 18651924
    In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
    "Singh J, Nagaraju J"
    "Insect Mol Biol (2008) 17:427-436

  2. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696