miRBase entry: tca-mir-305

Stem-loop tca-mir-305


Accession
MI0008928
Description
Tribolium castaneum tca-mir-305 precursor miRNA
Gene family
MIPF0000158; mir-305

Literature search
1 open access papers mention tca-mir-305
(1 sentences)

Sequence

cacaugucuAUUGUACUUCAUCAGGUGCUCugguauacuuuuuccCGACACCUGUUGGAGUGCACUAauuaugug
((((((.....(((((((((.((((((.((.((..........)).)))))))).))))))))).....))))))

Structure
      ucuAU         U      C  u  uaua 
cacaug     UGUACUUCA CAGGUG UC gg    c
||||||     ||||||||| |||||| || ||     
guguau     ACGUGAGGU GUCCAC AG cc    u
      uaAUC         U      -  C  uuuu 


Annotation confidence Not enough data
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Genome context
ChLG9: 10587469-10587543 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from tca-mir-305
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-305-5p

Accession MIMAT0008388
Description Tribolium castaneum tca-miR-305-5p mature miRNA
Sequence 10 - AUUGUACUUCAUCAGGUGCUC - 30
Evidence experimental
SOLID [2]
Database links

Mature tca-miR-305-3p

Accession MIMAT0019128
Description Tribolium castaneum tca-miR-305-3p mature miRNA
Sequence 46 - CGACACCUGUUGGAGUGCACUA - 67
Evidence experimental
SOLID [2]
Database links

References

  1. PubMed ID: 18651924
    In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
    "Singh J, Nagaraju J"
    "Insect Mol Biol (2008) 17:427-436

  2. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696