Stem-loop hsv1-mir-H3

Accession

MI0008938

Description

Herpes Simplex Virus 1 hsv1-mir-H3 precursor miRNA

Gene family

MIPF0000717; mir-H3

Sequence

ccgcgggcgcgCUCCUGACCGCGGGUUCCGAGUugggcguggagguuacCUGGGACUGUGCGGUUGGGACggcgcccgugg
((((((((((..(((((((((((.(.(((.((.(((.(.....).))).)).))).).)))))))))))..))))))))))

Structure

          gC           G U   G  U   g g 
ccgcgggcgc  UCCUGACCGCG G UCC AG ugg c u
||||||||||  ||||||||||| | ||| || ||| | g
ggugcccgcg  AGGGUUGGCGU U AGG UC auu g g
          gC           G C   G  c   g a 

Annotation confidence Not enough data

Comments

This sequence was named miR-I in [2].

Genome context

Unknown

Mature hsv1-miR-H3-5p

• Accession: MIMAT0015279
• Description: Herpes Simplex Virus 1 hsv1-miR-H3-5p mature miRNA
• Sequence: 12 - CUCCUGACCGCGGGUUCCGAGU - 33
• Evidence: experimental ; Illumina [4]

Mature hsv1-miR-H3-3p

• Accession: MIMAT0008400
• Description: Herpes Simplex Virus 1 hsv1-miR-H3-3p mature miRNA
• Sequence: 50 - CUGGGACUGUGCGGUUGGGAC - 70
• Evidence: experimental ; 454 [1], qRT-PCR [1], cloned [2], Illumina [3]

References

1. PubMed ID: 20181707
   Numerous conserved and divergent microRNAs expressed by herpes simplex viruses 1 and 2
   "Jurak I, Kramer MF, Mellor JC, van Lint AL, Roth FP, Knipe DM, Coen DM"
   "J Virol (2010) 84:4659-4672


2. PubMed ID: 18596690
   MicroRNAs expressed by herpes simplex virus 1 during latent infection regulate viral mRNAs
   "Umbach JL, Kramer MF, Jurak I, Karnowski HW, Coen DM, Cullen BR"
   "Nature (2008) 454:780-783


3. PubMed ID: 19656888
   Analysis of human alphaherpesvirus microRNA expression in latently infected human trigeminal ganglia
   "Umbach JL, Nagel MA, Cohrs RJ, Gilden DH, Cullen BR"
   "J Virol (2009) 83:10677-10683


4. PubMed ID: 18678906
   An acutely and latently expressed herpes simplex virus 2 viral microRNA inhibits expression of ICP34.5, a viral neurovirulence factor
   "Tang S, Bertke AS, Patel A, Wang K, Cohen JI, Krause PR"
   "Proc Natl Acad Sci U S A (2008) 105:10931-10936