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miRBase |
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Stem-loop sequence hsv1-mir-H6 |
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Accession | MI0008941 (change log) |
Description | Herpes Simplex Virus 1 miR-H6 stem-loop |
Gene family | MIPF0000738; mir-H1 |
Stem-loop |
-c a ca u --a g 5' cgggggg cgg ggguggaagg ggggggug agg ug g ||||||| ||| |||||||||| |||||||| ||| || u 3' gcucccc gcc ccuaccuucc cccuucac uuc ac a uu c ug c agg u |
Confidence |
Annotation confidence: not enough data
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Database links |
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Mature sequence hsv1-miR-H6-5p |
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Accession | MIMAT0015281 |
Sequence |
14 - gguggaaggcaggggggugua - 34 |
Evidence | experimental; Illumina [3] |
Mature sequence hsv1-miR-H6-3p |
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Accession | MIMAT0008404 |
Previous IDs | hsv1-miR-H6 |
Sequence |
54 - cacuucccguccuuccauccc - 74 |
Evidence | experimental; 454 [1], qRT-PCR [1], Illumina [2-3] |
References |
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1 |
PMID:18596690
"MicroRNAs expressed by herpes simplex virus 1 during latent infection regulate viral mRNAs"
Nature. 454:780-783(2008).
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2 |
PMID:19656888
"Analysis of human alphaherpesvirus microRNA expression in latently infected human trigeminal ganglia"
J Virol. 83:10677-10683(2009).
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3 |
PMID:20181707
"Numerous conserved and divergent microRNAs expressed by herpes simplex viruses 1 and 2"
J Virol. 84:4659-4672(2010).
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