miRBase entry: der-mir-309

Stem-loop der-mir-309


Accession
MI0009026
Description
Drosophila erecta der-mir-309 precursor miRNA
Gene family
MIPF0000140; mir-3


Sequence

auuauacgacaaaccuuguucgguuuugccaauuuccuagccaGCACUGGGUAAAGUUUGUCCUAuaau
((((((.(((((((.(((((((((.(((.(.........).))).))))))))).))))))).))))))

Structure
      c       c         u   c aau 
auuaua gacaaac uuguucggu uug c   u
|||||| ||||||| ||||||||| ||| |   u
uaauAU CUGUUUG AAUGGGUCA Gac g   c
      C       A         C   c auc 


Annotation confidence Not enough data
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Genome context
scaffold_4845: 9749455-9749523 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from der-mir-309
Name Accession Chromosome Start End Strand Confidence




Database links

Mature der-miR-309

Accession MIMAT0008487
Description Drosophila erecta der-miR-309 mature miRNA
Sequence 44 - GCACUGGGUAAAGUUUGUCCUA - 65
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218